JPOST Repository / Database Japan Japan Proteome Standard Repository/Database

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PXC has been selected as one of Global Core Biodata Resources.

2022-12-19 jpost

The Global Biodata Coalition (GBC) has announced the first list of Global Core Biodata Resources (GCBRs) — a collection of 37 resources whose long term funding and sustainability is critical to life science and biomedical research worldwide. ProteomeXchange consortium (PXC), of which jPOST is a member, is included in the first list.

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A paper summarizing PXC’s activities and achievements over the past 10 years has been published

2022-11-19 jpost

A paper summarizing the past 10 years of activities and accomplishments of the ProteomeXchange consortium has been published. The paper also describes the data journal we launched, the Journal of Proteome Data and Methods (JPDM). We are promoting the reanalysis of higher quality data using the accurate metadata collected by JPDM. The ProteomeXchange consortium at 10 years: 2023 update. Eric W Deutsch, Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy J Carver, Luis Mendoza, Deepti J Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno. Nucleic […]

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jPOST repository and database will be stopped. (on Dec. 2-4)

2022-11-19 jpost

jPOST repository and database server will be unavailable during the time shown below due to a scheduled system maintenance. We thank you for your understanding and cooperation in this matter. Date and Time: Friday, December 2, 17:00 – Sunday, December 4, 18:00 (UTC+9)

event

JCompMS th workshop

2022-04-8 jpost

Workshop details in Japanese

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jPOST repository and database will be intermittently unavailable. (on Mar. 23rd)

2022-03-14 jpost

jPOST repository and database will be intermittently unavailable during the time shown below due to network construction. We thank you for your understanding and cooperation in this matter. Date and Time: Wednesday, March 23, 16:00 – 17:00 (UTC+9)

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jPOST will publish the re-analyzed proteome data related to COVID-19

2020-07-8 jpost

jPOST will publish the re-analyzed proteome data related to COVID-19 as soon as possible to support the scientific community for overcoming the world-wide crisis.

Current progress: 100% [ Last modified date: 2021-07-13 ]

COVID-19 datasets

Analysis target
PXD019113 The Global Phosphorylation Landscape of SARS-CoV-2 Infection
PXD019645 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing
PXD019423 MS analysis of SARS-CoV2 proteins from patient samples
PXD018804 Extensive proteomic dataset of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus at Day 4 post-infection
PXD018594 Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus
PXD018357 Inhibition of growth factor signaling prevents SARS-CoV-2 replication
PXD018117 A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Purposing
PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells
PXD018241 Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site.
PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
Currently analysis pending
PXD019221 Proteomic and Metabolomic Characterization of COVID-19 Patient Sera
PXD018970 Urine proteomics profiling of the COVID-19
Not for analysis
PXD018307 The Analysis of Plasma Metabolome and Lipidome of Patients with COVID-19
PXD019300 SARS-CoV-2_PRM_SRM_targeted_acquisitions
PXD019232 Proteomic and Metabolomic Characterization of COVID-19 Patient Sera MRMHR
PXD018760 TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS
PXD018682 MS analysis of SARS-CoV2 proteins from patient samples
PXD019163 Glycosylation analysis of SARS-CoV-2 S and hCoV-HKU1 S
PXD019119 Fast and low-cost detection of SARS-CoV-2 peptides by tandem mass spectrometry in clinical samples
PXD019282 N-glycosites and O-glycosites on Spike glycoprotein of SARS-CoV-2

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