JPOST Repository / Database Japan Japan Proteome Standard Repository/Database

Recent posts

event

JCompMS th workshop

2022-04-8 jpost

Workshop details in Japanese

other

jPOST repository and database will be intermittently unavailable. (on Mar. 23rd)

2022-03-14 jpost

jPOST repository and database will be intermittently unavailable during the time shown below due to network construction. We thank you for your understanding and cooperation in this matter. Date and Time: Wednesday, March 23, 16:00 – 17:00 (UTC+9)

other

jPOST website will be stopped. (on Feb. 10th)

2022-02-4 jpost

jPOST website (https://jpostdb.org/) will be down during the following hours due to the planned server migration. However, jPOST repository and database will be available as usual. We thank you for your understanding and cooperation in this matter. Date and Time: Thursday, February 10, 9:00 – 13:00 (UTC+9)

other

jPOST member’s co-authored paper about USI has been published.

2021-06-30 jpost

The Universal Spectrum Identifier (USI) is an essential mechanism for the wide use of proteomics data provided by the ProteomeXchange (PX) repositories. It has been discussed for a long time in the HUPO Proteomics Standards Initiative, to which jPOST member Prof. Kawano has contributed greatly. The USI facilitates access to the huge amount of spectral data registered in the PX repositories, and is expected to make proteomics data is more findable, accessible, interoperable, and reusable. We expect that the USI leads to the use of jPOST data and contribute to research in the field of life science, including proteome research. Universal Spectrum Identifier for mass spectra. Eric W. Deutsch, Yasset […]

event

JCompMS 6th workshop

2021-05-26 jpost

Workshop details in Japanese

jPOST
  • About
  • Repository
  • Database
  • Workflow
  • Gadgets
  • COVID-19
  • Help
  • FAQ
  • Contact
  • rss

Gadgets

Mass spectrometry-based proteomics needs a variety of tools for data processing, quantification, data integration, and so on.
jPOST project team has developed a variety of tools for proteome analysis, and the jPOST gadget is a collection of these tools we have developed as well as other commonly used tools for mass spectrometry-based proteomics.

jPOST tool box

Kinapple
http://seizai.pharm.kyoto-u.ac.jp/kinapple

iMPAQT-Quant
https://impaqt.jpostdb.org/iMPAQT/
Related tool box

Mass++
https://www.mspp.ninja/?lang=en_us

Phos-tag SDS-PAGE database
http://phostag.hiroshima-u.ac.jp/index(E).html
Search engines

Mascot
http://www.matrixscience.com/

Andromeda (part of MaxQuant)
http://coxdocs.org/doku.php?id=maxquant:andromeda:start

SEQUEST
http://proteomicswiki.com/wiki/index.php/SEQUEST_installation_instructions

X!Tandem
https://www.thegpm.org/TANDEM/
Members of ProteomeXchange consortium

PRIDE
https://www.ebi.ac.uk/pride/

PeptideAtlas
http://www.peptideatlas.org/

MassIVE
http://massive.ucsd.edu/ProteoSAFe/static/massive.jsp

iProX
http://www.iprox.org/

Panorama Public
https://panoramaweb.org/labkey/project/Panorama%20Public/begin.view?

© Copyright 2021 jPOST